The Team

Ilyas Yildirim
Assistant Professor

Department of Chemistry and Biochemistry

Charles E. Schmidt College of Science
Florida Atlantic University, Jupiter FL

Email : iyildirim [at] fau.edu

Phone : 561-799-8325

Education:

Postdoctoral Researcher: University of Cambridge (2014-2016)
Northwestern University (2010-2014)
University of Rochester (2008-2010)
PhD and MA in Physics: University of Rochester (2008 and 2002)
BS in Physics: Koc University, Turkey (1999)

Awards:

  • BBSRC (UK) David Phillips Fellowship Finalist (2016).

  • Postdoctoral Professional Development Travel Award, Northwestern University (2014).

  • Physical Sciences-Oncology Centers (PS-OCs) Student Exchange Award, Northwestern University (2012). Title: Computational investigation of small molecule/ligand binding to RNA related human diseases caused by trinucleotide and tetranucleotide repeat expansions.

  • Full Scholarship and Tuition Waiver for undergraduate study, Koc University (1994-1999).

  • Honorable mention prize in Physics, the Scientific and Technological Research Council of Turkey (TUBITAK) (1992). Title: Noise absorption capacities of cheap and simple materials.

Referee / Reviewer:

  • Journal of Physical Chemistry B

  • Journal of Chemical Theory and Computation

  • Journal of Chemical Information and Modeling

  • Biochemistry

  • PLoS ONE

  • Nature Molecular Therapy-Nucleic Acids

  • Nucleic Acids Research - Oxford Journals

  • Scientific Reports

  • Journal of Molecular Modeling

  • Biophysical Journal

Current Members

Ivan Riveros (PREPChem Postbaccalaureate Student), Fall 2018 - present

Department of Chemistry and Biochemistry, FAU

Project: Stacking/Unstacking Properties of RNA Dimers, and 3D Structure Prediction of RNA Tetraloops from Sequence


Niransha Kumarachchi (Ph.D. Student), Fall 2019 - present

Department of Chemistry and Biochemistry, FAU

Project: RNA Force Fields


Maureen Tanner (Undergraduate Student), Spring 2021 - present

Harriet L. Wilkes Honors College, Department of Chemistry and Biochemistry, FAU

Project: Properties of RNA Adenosine Bulges Using Computational Methods


Mariam Ibrahim (Ph.D. Student), Fall 2021 - present

Department of Chemistry and Biochemistry, FAU

Project: Development of a Monte Carlo Simulator for RNA 3D Structure Prediction


Geoffrey Moody (Undergraduate Student), Spring 2022 - present

Department of Chemistry and Biochemistry, FAU

Project: Optimization of Lead Compounds Targeting RNA CUG Repeats Using Computational Methods


Adam Burjan (Undergraduate Student), Spring 2022 - present

Harriet L. Wilkes Honors College, Department of Chemistry and Biochemistry, FAU

Project: Optimization of Lead Compounds Targeting RNA CUG Repeats Using Computational Methods


Michael Cevallos (Undergraduate Student), Spring 2022 - present

Department of Chemistry and Biochemistry, FAU

Project: 3D Structure Prediction of RNA Internal Loops from Sequence


Jaelyn Hayes (Undergraduate Student), Spring 2023 - present

Department of Chemistry and Biochemistry, FAU

Project: Stacking in RNA

Previous Members

Arjun Nair, Highschool/Undergraduate Student/FAU, Summer 2021 - Fall 2022

Project Worked: In Silico Drug Design for RNA.

Current Position: High School Student at A.D. Henderson University School & FAU High School


Julianna Lian, Highschool-Undergraduate Student/FAU, Spring 2020 - Summer 2022

Project Worked: Application of AFM on RNA CUG repeat expansion and Monte Carlo Simulator for RNA Structure Prediction.

Current Position: Undergraduate student at MIT, Chemistry and Computer Science


Riccardo D'Ambrosio, Cardinal Gibbons High School Student, Spring 2020 - Summer 2021

Project Worked: Development of a webserver for 'RNA folding' problem, and RUSTing RNA 3D Structure Prediction Algorithm

Current Position: Undergraduate student at FAU


Dr. Amirhossein Taghavi, Postdoctoral Researcher, May 2019 - July 2021

Project Worked: Application of computational methods in RNA and modified RNA systems

Current Position: Postdoc at UF-Scripps Research Institute Florida (Disney Lab)


Dr. Kye Won Wang, Postdoctoral Researcher, May 2019 - December 2020

Project Worked: Method development for small molecule-RNA binding

Current Position: Postdoc at Lehigh University (Im Lab)


James DeLoye, Atlantic Community High School Student, Summer 2019

Project Worked: Application of Dendrograms in small molecule-RNA binding studies

Current Position: Undergraduate student at UC Berkeley, College of Chemistry


Marina Nad, B.S. in Chemistry and Biochemistry/FAU, Spring 2018 - Spring 2019

Project Worked: Structural studies of microRNA in RNA Inducing Silencing Complex (RISC) using computational methods

Current Position: Research Associate at MODERNA

© YildirimLab 2017 (updated 1/27/2023)